PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 244aa    MW: 25983 Da    PI: 7.9712
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040702.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82.1e-39141151101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++
  HL.SW.v1.0.G040702.1  14 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVA 102
                           7*************************99************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l+a+l+++k++l
  HL.SW.v1.0.G040702.1 103 CLQAQLVQAKAQL 115
                           *******999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.813115IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-3814112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MASATTGTGS AGSPCGACKF LRRKCAADCI FAPYFCSEQG PARFAAIHKV FGASNVSKLL  60
LHVPVPDRCE AVVTIAYEAQ ARIRDPVYGC VAHIFALQQQ VACLQAQLVQ AKAQLAQSYN  120
DHSRSSTTHH HVENNIMNQY GSSSATNNLY LNNNSNSTYV NNYPISPQSS LDSVDQNGSD  180
LMMNGGGGGG GGRSAHHQEI ESGRVVSAED YYLVQAAAAC SRKRPSNGEL GELHALALRM  240
MRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235713.11e-92PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB77e-73LBD16_ARATH; LOB domain-containing protein 16
TrEMBLB9GS353e-92B9GS35_POPTR; LOB domain protein 16
STRINGPOPTR_0002s04210.19e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-53lateral organ boundaries-domain 16